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start [2024/04/29 13:16] – [Guides and Tutorials] Chris Raceystart [2024/05/03 13:35] (current) – [Guides and Tutorials] Chris Racey
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   * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC   * [[:mr_processing|MR data processing guide]] - a work-in-progress page to unify data analysis at CISC
   * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis   * [[:online_guides|Useful Online tutorials]] - a collection of links to tutorials for MRI or related analysis
-  * [[https://youtu.be/N2hGMtfbr_8|Video Guide to prepreprocessing with fmriprep for Sussex/CISC acquired data]] -  walks through step by step fmriprep processing using the Sussex Neuroscience analysis infrastructure, the cisc volumes, and the Apollo2 HPC cluster. All necessary script files are available [[https://canvas.sussex.ac.uk/courses/20867/files/4771674/download?download_frd=1|here]].+  * [[https://youtu.be/N2hGMtfbr_8|Video Guide to prepreprocessing with fmriprep for Sussex/CISC acquired data]] - walks through step by step fmriprep processing using the Sussex Neuroscience analysis infrastructure, the cisc volumes, and the Apollo2 HPC cluster. All necessary script files are available [[https://canvas.sussex.ac.uk/courses/20867/files/4771674/download?download_frd=1|here]].
   * [[https://youtu.be/MvNXgoFdV2M|Topup Fieldmap Video Guide]] - for generating topup field maps to apply for subsequent processing in MATLAB/SPM/FSL/HCP pipeline   * [[https://youtu.be/MvNXgoFdV2M|Topup Fieldmap Video Guide]] - for generating topup field maps to apply for subsequent processing in MATLAB/SPM/FSL/HCP pipeline
 +  * [[https://youtu.be/ucWoxb5KMIE|Working with parcellated data in wbview (HCP Pipeline)]] - for loading in and working on parcellated cifti files in wbview. Example scripts and functions are available [[https://canvas.sussex.ac.uk/courses/20867/files/4797877/download|here]].
  
  
start.txt · Last modified: 2024/05/03 13:35 by Chris Racey